The integrative multiomics characterization of minute amounts of clinical tissue specimens has become increasingly important. Here, we present an approach called Integral-Omics, which enables sequential extraction of metabolites, lipids, genomic DNA, total RNA, proteins, and phosphopeptides from a single biopsy-level tissue specimen. We benchmarked this method with various samples, applied the workflow to perform multiomics profiling of tissues from six patients with colorectal cancer, and found that tumor tissues exhibited suppressed ferroptosis pathways at multiomics levels. Together, this study presents a methodology that enables sequential extraction and profiling of metabolomics, lipidomics, genomics, transcriptomics, proteomics, and phosphoproteomics using biopsy tissue specimens.
基金:
National Key R&D Program of China [2022YFF0608403, 2021YFA1301600, 2020YFE0202200, 2019YFA0801800]; Joint Funds of the National Natural Science Foundation of China [U24A20476]; The "Pioneer" and "Leading Goose" R&D Program of Zhejiang [2024SSYS0035]; Shanghai Science and Technology Commission [20JC1410100]; Westlake Educational Foundation
第一作者机构:[1]Westlake Univ, Affiliated Hangzhou Peoples Hosp 1, Sch Med, State Key Lab Med Prote, Hangzhou 310006, Zhejiang, Peoples R China[2]Westlake Lab Life Sci & Biomed, Westlake Ctr Intelligent Prote, Hangzhou 310024, Zhejiang, Peoples R China[3]Westlake Univ, Res Ctr Ind Future, Sch Life Sci, Hangzhou 310030, Zhejiang, Peoples R China
通讯作者:
通讯机构:[1]Westlake Univ, Affiliated Hangzhou Peoples Hosp 1, Sch Med, State Key Lab Med Prote, Hangzhou 310006, Zhejiang, Peoples R China[2]Westlake Lab Life Sci & Biomed, Westlake Ctr Intelligent Prote, Hangzhou 310024, Zhejiang, Peoples R China[3]Westlake Univ, Res Ctr Ind Future, Sch Life Sci, Hangzhou 310030, Zhejiang, Peoples R China[5]Shanghai Jiao Tong Univ, Shanghai Tongren Hosp, Hongqiao Int Inst Med, Key Lab Cell Differentiat & Apoptosis Chinese,Mini, Shanghai 200025, Peoples R China[6]Shanghai Jiao Tong Univ, Sch Med, Shanghai Key Lab Reprod Med, Shanghai 200025, Peoples R China
推荐引用方式(GB/T 7714):
Li Wei,Sun Jing,Sun Rui,et al.Integral-Omics: Serial Extraction and Profiling of Metabolome, Lipidome, Genome, Transcriptome, Whole Proteome and Phosphoproteome Using Biopsy Tissue[J].ANALYTICAL CHEMISTRY.2025,97(2):1190-1198.doi:10.1021/acs.analchem.4c04421.
APA:
Li, Wei,Sun, Jing,Sun, Rui,Wei, Yujuan,Zheng, Junke...&Guo, Tiannan.(2025).Integral-Omics: Serial Extraction and Profiling of Metabolome, Lipidome, Genome, Transcriptome, Whole Proteome and Phosphoproteome Using Biopsy Tissue.ANALYTICAL CHEMISTRY,97,(2)
MLA:
Li, Wei,et al."Integral-Omics: Serial Extraction and Profiling of Metabolome, Lipidome, Genome, Transcriptome, Whole Proteome and Phosphoproteome Using Biopsy Tissue".ANALYTICAL CHEMISTRY 97..2(2025):1190-1198