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Meta-analysis of gene-environment-wide association scans accounting for education level identifies additional loci for refractive error

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机构: [1]Singapore Eye Research Institute, Singapore National Eye Centre, Singapore 169856, Singapore [2]Duke-NUS Medical School, Singapore 169857, Singapore [3]Department of Ophthalmology, Erasmus Medical Center, 3000 CA Rotterdam, The Netherlands [4]Department of Epidemiology, Erasmus Medical Center,3000 CA Rotterdam, The Netherlands [5]Computational and Statistical Genomics Branch, National Human Genome Research Institute, National Institutes ofHealth, Baltimore, Maryland 21224, USA [6]Department of Epidemiology, Johns Hopkins Bloomberg School of Public Health, Baltimore, Maryland 20205,USA [7]Department of Ophthalmology, National University Health Systems, National University of Singapore Singapore 119228, Singapore [8]Department ofTwin Research and Genetic Epidemiology, King’s College London School of Medicine, London SE1 7EH, UK [9]School of Optometry and Vision Sciences, CardiffUniversity, Cardiff CF24 4HQ, UK [10]Department of Ophthalmology, University Medical Center Mainz, 55131 Mainz, Germany [11]Department ofOphthalmology, Inselspital, University Hospital Bern, CH-3010 Bern, Switzerland [12]Medical Research Council Human Genetics Unit, Institute of Genetics andMolecular Medicine, University of Edinburgh, Edinburgh EH4 2XU, Scotland [13]Department of Public Health and Primary Care, Institute of Public Health,University of Cambridge School of Clinical Medicine, Cambridge CB2 0SR, UK [14]Department of Ophthalmology and Visual Sciences, Kyoto UniversityGraduate School of Medicine, Kyoto 6068507, Japan [15]Program in Genetics and Genome Biology, The Hospital for Sick Children and Institute for MedicalSciences, University of Toronto, Toronto Ontario, Canada M5G 1X8 [16]Department of Clinical Chemistry, Fimlab Laboratories and School of Medicine,University of Tampere, Tampere 33520, Finland [17]Statistical Genetics Laboratory, QIMR Berghofer Medical Research Institute, Herston, Brisbane,Queensland 4029, Australia [18]Estonian Genome Center, University of Tartu, Tartu 51010, Estonia [19]Centre for Eye Research Australia (CERA), RoyalVictorian Eye and Ear Hospital, University of Melbourne, Melbourne, Victoria 3002, Australia [20]Universite´ de Bordeaux, ISPED (Institut de Sante´ Publiqued’E´pide´miologie et de De´veloppement), Bordeaux 33000, France [21]INSERM, U1219-Bordeaux Population Health Research Center, Bordeaux 33000, France [22]Institute of Population Genetics, National Research Council, Sassari 07100, Italy [23]Department of Public Health, University of Helsinki, Helsinki 00014,Finland [24]Department of Ophthalmology, University of Helsinki and Helsinki University Hospital, Helsinki 00014, Finland [25]UCL Institute of Ophthalmology,London SE1 7EH, UK [26]Menzies Research Institute Tasmania, University of Tasmania, Hobart, Tasmania 7000, Australia [27]Department of StatisticalScience, School of Mathematics and Computational Science, Sun Yat-Sen University, Guangzhou 510275, China [28]Institute of Medical Biostatistics,Epidemiology and Informatics, University Medical Center Mainz, 55131 Mainz, Germany [29]Department of Ophthalmology, King’s College London, LondonSE1 7EH, UK [30]Faculty of Medicine, University of Split, Split 21000, Croatia [31]Usher Institute for Population Health Sciences and Informatics, University ofEdinburgh, Teviot Place, Edinburgh EH8 9AG, Scotland [32]Department of Ophthalmology, Sisters of Mercy University Hospital, Zagreb 10000, Croatia [33]MRC Integrative Epidemiology Unit (IEU), University of Bristol, Bristol BS8 2BN, UK [34]School of Social and Community Medicine, University of Bristol,Bristol BS8 2BN, UK [35]Max Planck Institute for Psycholinguistics, Wundtlaan 1, 6525 XD Nijmegen, The Netherlands [36]University of QueenslandDiamantina Institute, Translational Research Institute, Brisbane, Queensland 4102, Australia [37]Department of Genetics, Genomics and Informatics,University of Tennessee Health Science Center, Memphis, Tennessee 38163, USA [38]Department of Epidemiology and Biostatistics, Case Western ReserveUniversity, Cleveland, Ohio 44106, USA [39]Dardenne Eye Hospital, Bonn-Bad Godesberg, 53177 Bonn, Germany [40]Inserm, U1167, Lille 59000, France [41]Univ.Lille, U1167, Lille 59000, France [42]Universite´ Lille 2, Lille 59000, France [43]Research Centre of Applied and Preventive Medicine, University of Turku,Turku 20520, Finland [44]Department of Clinical Physiology and Nuclear Medicine, Turku University Hospital, Turku 20520, Finland [45]Department of ClinicalPhysiology, Tampere University Hospital and School of Medicine, University of Tampere, Tampere 33520, Finland [46]Clinic for General and InterventionalCardiology, University Heart Center Hamburg, 20246 Hamburg, Germany [47]Institute of Human Genetics, Helmholtz Zentrum Mu¨nchen, 85764Neuherberg, Germany [48]Institute of Human Genetics, Klinikum rechts der Isar, Technische Universita¨t Mu¨nchen, 81675 Munich, Germany [49]Institute ofGenetic Epidemiology, Helmholtz Zentrum Mu¨nchen—German Research Center for Environmental Health, 85764 Neuherberg, Germany [50]Department ofInternal Medicine, Erasmus Medical Center, 3000 CA Rotterdam, The Netherlands [51]Netherlands Consortium for Healthy Ageing, Netherlands GenomicsInitiative, 2518 AD Hague, The Netherlands [52]Beijing Institute of Ophthalmology, Beijing Tongren Hospital, Capital Medical University, Beijing 100044,China [53]Saw Swee Hock School of Public Health, National University of Singapore and National University Health Systems, Singapore 117549, Singapore [54]National Healthcare Group Eye Institute, Tan Tock Seng Hospital, Singapore 308433, Singapore [55]Department of Medicine, National University ofSingapore, Singapore 119228, Singapore [56]Division of Human Genetics, Genome Institute of Singapore, Singapore 138672, Singapore [57]Division of Geneticsand Epidemiology, UCL Institute of Ophthalmology, London EC1V 9EL, UK [58]NIHR Biomedical Research Centre, Moorfields Eye Hospital NHS FoundationTrust and UCL Institute of Ophthalmology, London EC1V 2PD, UK [59]Department of Ophthalmology and Visual Sciences, University of Wisconsin School ofMedicine and Public Health, Madison, Wisconsin 53726, USA [60]Department of Ophthalmology, Centre for Vision Research, Westmead Institute for MedicalResearch, University of Sydney, Sydney, New South Wales 2145, Australia [61]Department of Ophthalmology and Visual Sciences, School of Medicine andPublic Health, University of Wisconsin, Madison, Wisconsin 53705, USA [62]State Key Laboratory of Ophthalmology, Zhongshan Ophthalmic Center, Sun YatSen University, Guangzhou 510060, China [63]Department of Ophthalmology, Central Hospital of Central Finland, Jyva¨skyla¨ 40620, Finland [64]GerontologyResearch Center and Department of Health Sciences, University of Jyva¨skyla¨, Jyva¨skyla¨ 40014, Finland [65]Medical Faculty Mannheim, Department ofOphthalmology, Ruprecht-Karls-University Heidelberg, 69115 Mannheim, Germany [66]Department of Statistics and Applied Probability, National University ofSingapore, Singapore 117546, Singapore [67]Centre for Ophthalmology and Visual Science, Lions Eye Institute, University of Western Australia, Perth, WesternAustralia 6009, Australia [68]Department of Ophthalmology, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA [69]Medical Research Council Centre of Epidemiology for Child Health, Institute of Child Health, University College London, London WC1E 6BT, UK [70]Instituteof Ophthalmology, Moorfields Eye Hospital, London EC1V 2PD, UK [71]Ulverscroft Vision Research Group, University College London, London WC1E 6BT, UK [72]Universite´ de Bordeaux, 33400 Talence, France [73]INSERM (Institut National de la Sante´ Et de la Recherche Me´dicale), ISPED (Institut de Sante´ Publiqued’E´pide´miologie et de De´veloppement), Centre INSERM U897-Epidemiologie-Biostatistique, 33076 Bordeaux, France [74]MRC Integrative Epidemiology Unit(IEU), The University of Bristol, Bristol BS8 2BN, UK [75]Department of Ophthalmology, Flinders University, Adelaide, South Australia 5001, Australia [76]Department of Epidemiology and Biostatistics, Case Western Reserve University, Cleveland, Ohio 44106, USA [77]Department of Ophthalmology and VisualSciences, Case Western Reserve University and University Hospitals Eye Institute, Cleveland, Ohio 44106, USA [78]Department of Genetics, Case WesternReserve University, Cleveland, Ohio 44106, USA [79]National Eye Institute, National Institutes of Health, Bethesda, Maryland 20892, USA [80]GeneticEpidemiology Laboratory, QIMR Berghofer Medical Research Institute, Herston, Brisbane, Queensland 4029, Australia [81]Suraj Eye Institute, Nagpur,Maharashtra 440001, India [82]Department of Pediatric Ophthalmology, Duke Eye Center For Human Genetics, Durham, North Carolina 27710, USA [83]MRC Epidemiology Unit, Institute of Metabolic Sciences, University of Cambridge, Cambridge CB2 1TN, UK [84]MRC Epidemiology Unit, Institute ofMetabolic Science, Addenbrooke’s Hospital, Cambridge CB2 0QQ, UK [85]Gerontology Research Center, University of Jyva¨skyla¨, Jyva¨skyla¨ 40014, Finland [86]Department of Public Health, University of Helsinki, Helsinki 00014, Finland [87]Institute for Molecular Medicine, University of Helsinki, Helsinki 00014,Finland [88]Department of Mental Health and Alcohol Abuse Services, National Institute for Health and Welfare, Helsinki 00271, Finland [89]Department ofOphthalmology and Visual Sciences, Hong Kong Eye Hospital, The Chinese University of Hong Kong, Kowloon, Hong Kong [90]Department of Ophthalmologyand Visual Sciences, Prince of Wales Hospital, The Chinese University of Hong Kong, Shatin, Hong Kong [91]Institute of Epidemiology I, Helmholtz ZentrumMu¨nchen, German Research Center for Environmental Health, 85764 Neuherberg, Germany [92]Institute of Epidemiology II, Helmholtz Zentrum Mu¨nchen,German Research Center for Environmental Health, 85764 Neuherberg, Germany [93]Medical Genetics Institute, Cedars-Sinai Medical Center, Los Angeles,California 90048, USA [94]Division of Epidemiology and Clinical Applications, National Eye Institute, Bethesda, Maryland 20892, USA [95]Institute forTranslational Genomics and Population Sciences, Los Angeles Biomedical Research Institute, Harbor-UCLA Medical Center, Los Angeles, California 90502,USA [96]Department of Health Technology and Informatics, The Hong Kong Polytechnic University, Hong Kong, Hong Kong [97]Institute of Molecular Genetics,National Research Council, Pavia 27100, Italy [98]Princess Alexandra Eye Pavilion, Edinburgh EH3 9HA, UK [99]Department of Ophthalmology and VisualSciences, Moran Eye Center, University of Utah, Salt Lake City, Utah 84132, USA [100]Department of Ophthalmology and Visual Sciences, John Moran EyeCenter, University of Utah, Salt Lake City, Utah 84132, USA [101]Departments of Medicine (Biomedical Genetics), Ophthalmology, Neurology, Epidemiologyand Biostatistics, Boston University Schools of Medicine and Public Health, Boston, Massachusetts 02118, USA [102]School of ophthalmology and optometry,Wenzhou Medical University, Wenzhou 325035, China [103]Department of Ophthalmology, Yokohama City University School of Medicine,Yokohama, Kanagawa 236-0027, Japan [104]Department of Clinical Chemistry, Fimlab Laboratories and School of Medicine, University of Tampere,Tampere 33014, Finland.
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Myopia is the most common human eye disorder and it results from complex genetic and environmental causes. The rapidly increasing prevalence of myopia poses a major public health challenge. Here, the CREAM consortium performs a joint meta-analysis to test single-nucleotide polymorphism (SNP) main effects and SNP x education interaction effects on refractive error in 40,036 adults from 25 studies of European ancestry and 10,315 adults from 9 studies of Asian ancestry. In European ancestry individuals, we identify six novel loci (FAM150B-ACP1, LINC00340, FBN1, DIS3L-MAP2K1, ARID2-SNAT1 and SLC14A2) associated with refractive error. In Asian populations, three genome-wide significant loci AREG, GABRR1 and PDE10A also exhibit strong interactions with education (P < 8.5 x 10(-5)), whereas the interactions are less evident in Europeans. The discovery of these loci represents an important advance in understanding how gene and environment interactions contribute to the heterogeneity of myopia.

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大类 | 1 区 综合性期刊
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Q1 MULTIDISCIPLINARY SCIENCES
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第一作者机构: [1]Singapore Eye Research Institute, Singapore National Eye Centre, Singapore 169856, Singapore [2]Duke-NUS Medical School, Singapore 169857, Singapore
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通讯机构: [1]Singapore Eye Research Institute, Singapore National Eye Centre, Singapore 169856, Singapore [2]Duke-NUS Medical School, Singapore 169857, Singapore [3]Department of Ophthalmology, Erasmus Medical Center, 3000 CA Rotterdam, The Netherlands [4]Department of Epidemiology, Erasmus Medical Center,3000 CA Rotterdam, The Netherlands [7]Department of Ophthalmology, National University Health Systems, National University of Singapore Singapore 119228, Singapore [53]Saw Swee Hock School of Public Health, National University of Singapore and National University Health Systems, Singapore 117549, Singapore
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