A person's lipid profile is influenced by genetic variants and alcohol consumption, but the contribution of interactions between these exposures has not been studied. We therefore incorporated gene-alcohol interactions into a multiancestry genome-wide association study of levels of high-density lipoprotein cholesterol, low-density lipoprotein cholesterol, and triglycerides. We included 45 studies in stage 1 (genome-wide discovery) and 66 studies in stage 2 (focused follow-up), for a total of 394,584 individuals from 5 ancestry groups. Analyses covered the period July 2014-November 2017. Genetic main effects and interaction effects were jointly assessed by means of a 2-degrees-of-freedom (df) test, and a 1-df test was used to assess the interaction effects alone. Variants at 495 loci were at least suggestively associated (P < 1 x 10(-6)) with lipid levels in stage 1 and were evaluated in stage 2, followed by combined analyses of stage 1 and stage 2. In the combined analysis of stages 1 and 2, a total of 147 independent loci were associated with lipid levels at P < 5 x 10(-8) using 2-df tests, of which 18 were novel. No genome-wide-significant associations were found testing the interaction effect alone. The novel loci included several genes (proprotein convertase subtilisin/kexin type 5 (PCSK5), vascular endothelial growth factor B (VEGFB), and apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1 (APOBEC1) complementation factor (A1CF)) that have a putative role in lipid metabolism on the basis of existing evidence from cellular and experimental models.
基金:
Zoll Lifecor Corporation, Pittsburgh, Pennsylvania; Johnson & Johnson (New Brunswick, New Jersey)Johnson & JohnsonJohnson & Johnson USA; Metagenics, Inc. (Aliso Viejo, California) on women's health and epigenetics; Nestle S. A. (Vevey, Switzerland) on child health; Data Tecnica International (Glen Echo, Maryland); NIA (Bethesda, Maryland); Sanofi (Guildford, United Kingdom); Amgen (Uxbridge, United Kingdom); Takeda (London, United Kingdom),; Servier (Suresnes, France); Pfizer (Tadwork, United Kingdom); Pfizer Inc. (New York, New York)Pfizer; NATIONAL CANCER INSTITUTEUnited States Department of Health & Human ServicesNational Institutes of Health (NIH) - USANIH National Cancer Institute (NCI) [UM1CA173640, UM1CA182913, UM1CA182910, UM1CA182876] Funding Source: NIH RePORTER; NATIONAL CENTER FOR ADVANCING TRANSLATIONAL SCIENCESUnited States Department of Health & Human ServicesNational Institutes of Health (NIH) - USANIH National Center for Advancing Translational Sciences (NCATS) [UL1TR001881] Funding Source: NIH RePORTER; NATIONAL HEART, LUNG, AND BLOOD INSTITUTEUnited States Department of Health & Human ServicesNational Institutes of Health (NIH) - USANIH National Heart Lung & Blood Institute (NHLBI) [R01HL120393, R01HL119443, R01HL117078, R01HL105756, R01HL055673, R01HL059367, R01HL086694, R01HL118305, R01HL142302, U01HL130114] Funding Source: NIH RePORTER; NATIONAL HUMAN GENOME RESEARCH INSTITUTEUnited States Department of Health & Human ServicesNational Institutes of Health (NIH) - USANIH National Human Genome Research Institute (NHGRI) [ZIAHG200362] Funding Source: NIH RePORTER; NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASESUnited States Department of Health & Human ServicesNational Institutes of Health (NIH) - USANIH National Institute of Diabetes & Digestive & Kidney Diseases (NIDDK) [R01DK075787, R01DK071891, P30DK020572, R01DK089256, U01DK062370, R01DK101855, P30DK063491, R01DK072193, R01DK093757, R01DK117445] Funding Source: NIH RePORTER; NATIONAL INSTITUTE ON AGINGUnited States Department of Health & Human ServicesNational Institutes of Health (NIH) - USANIH National Institute on Aging (NIA) [ZIAAG000513, U01AG009740, ZIAAG007380, U01AG023746, ZIAAG000519, R01AG055406, R01AG023629] Funding Source: NIH RePORTER; National Institute on Minority Health and Health DisparitiesUnited States Department of Health & Human ServicesNational Institutes of Health (NIH) - USANIH National Institute on Minority Health & Health Disparities (NIMHD) [R01MD012765] Funding Source: NIH RePORTER; NATIONAL LIBRARY OF MEDICINEUnited States Department of Health & Human ServicesNational Institutes of Health (NIH) - USANIH National Library of Medicine (NLM) [R01LM010098] Funding Source: NIH RePORTER; BBSRCUK Research & Innovation (UKRI)Biotechnology and Biological Sciences Research Council (BBSRC) [BB/F019394/1] Funding Source: UKRI; MRCUK Research & Innovation (UKRI)Medical Research Council UK (MRC) [G0601966, MR/L01341X/1, G0700931, MR/R026505/1, MR/L01632X/1, MC_UU_12015/1, MC_UU_00007/10, MR/K002414/1, MC_UP_1605/7] Funding Source: UKRI
第一作者机构:[1]Univ Texas Hlth Sci Ctr Houston, Sch Publ Hlth, Dept Epidemiol Human Genet & Environm Sci, Ctr Human Genet, 1200 Pressler St,Suite E-429, Houston, TX 77030 USA[*1]Human Genetics Center, Department of Epidemiology, Human Genetics, and Environmental Sciences, School of Public Health, University of Texas Health Science Center at Houston, 1200 Pressler Street, Suite E-429, Houston, TX 77030
通讯作者:
通讯机构:[1]Univ Texas Hlth Sci Ctr Houston, Sch Publ Hlth, Dept Epidemiol Human Genet & Environm Sci, Ctr Human Genet, 1200 Pressler St,Suite E-429, Houston, TX 77030 USA[21]Harvard Univ, TH Chan Sch Publ Hlth, Dept Epidemiol, Boston, MA 02115 USA[22]Inst Pasteur, Ctr Bioinformat Biostat & Biol Integrat, Paris, France[*1]Human Genetics Center, Department of Epidemiology, Human Genetics, and Environmental Sciences, School of Public Health, University of Texas Health Science Center at Houston, 1200 Pressler Street, Suite E-429, Houston, TX 77030[*2]Division of Biostatistics, Washington University School of Medicine, 660 South Euclid Avenue, Campus Box 8067, St. Louis,MO 63110[*3]Human Genetics Center, Department of Epidemiology, Human Genetics, and Environmental Sciences, School of Public Health, University of Texas Health Science Center at Houston, 1200 Pressler Street, Suite E-447, Houston, TX 77030
推荐引用方式(GB/T 7714):
de Vries Paul S.,Brown Michael R.,Bentley Amy R.,et al.Multiancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions[J].AMERICAN JOURNAL OF EPIDEMIOLOGY.2019,188(6):1033-1054.doi:10.1093/aje/kwz005.
APA:
de Vries, Paul S.,Brown, Michael R.,Bentley, Amy R.,Sung, Yun J.,Winkler, Thomas W....&Dabeeru C. Rao.(2019).Multiancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions.AMERICAN JOURNAL OF EPIDEMIOLOGY,188,(6)
MLA:
de Vries, Paul S.,et al."Multiancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions".AMERICAN JOURNAL OF EPIDEMIOLOGY 188..6(2019):1033-1054