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Multiancestry Genome-Wide Association Study of Lipid Levels Incorporating Gene-Alcohol Interactions

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机构: [1]Univ Texas Hlth Sci Ctr Houston, Sch Publ Hlth, Dept Epidemiol Human Genet & Environm Sci, Ctr Human Genet, 1200 Pressler St,Suite E-429, Houston, TX 77030 USA [2]NHGRI, Ctr Res Genom & Global Hlth, NIH, Bethesda, MD 20892 USA [3]Washington Univ, Sch Med, Div Biostat, 660 South Euclid Ave,Campus Box 8067, St Louis, MO 63110 USA [4]Univ Regensburg, Fac Med, Dept Genet Epidemiol, Regensburg, Germany [5]Queen Mary Univ London, Barts & London Sch Med & Dent, William Harvey Res Inst, Clin Pharmacol Ctr, London, England [6]Washington Univ, Sch Med, Dept Genet, Div Stat Genom, St Louis, MO 63110 USA [7]Harbor UCLA Med Ctr, LA BioMed, Inst Translat Genom & Populat Sci, Genom Outcomes,Pediat, Torrance, CA 90509 USA [8]Univ N Carolina, Gillings Sch Global Publ Hlth, Dept Epidemiol, Chapel Hill, NC 27515 USA [9]Singapore Natl Eye Ctr, Singapore Eye Res Inst, Singapore, Singapore [10]Duke NUS Med Sch, Ophthalmol & Visual Sci Acad Clin Program, Acad Med Res Inst, Ctr Quantitat Med, Singapore, Singapore [11]Natl Univ Singapore, Yong Loo Lin Sch Med, Dept Ophthalmol, Singapore, Singapore [12]Natl Univ Singapore, Saw Swee Hock Sch Publ Hlth, Singapore, Singapore [13]Natl Univ Hlth Syst, Singapore, Singapore [14]Erasmus MC, Dept Epidemiol, Rotterdam, Netherlands [15]Univ Edinburgh, Inst Genet & Mol Med, MRC, Human Genet Unit, Edinburgh, Midlothian, Scotland [16]Univ Mississippi, Med Ctr, Dept Med, Jackson Heart Study, Jackson, MS 39216 USA [17]Univ Georgia, Coll Publ Hlth, Dept Epidemiol & Biostat, Athens, GA 30602 USA [18]Univ Texas Hlth Sci Ctr Houston, Brown Fdn Inst Mol Med, Houston, TX 77030 USA [19]Leiden Univ, Med Ctr, Dept Internal Med, Leiden, Netherlands [20]Leiden Univ, Med Ctr, Dept Gerontol & Geriatr, Leiden, Netherlands [21]Harvard Univ, TH Chan Sch Publ Hlth, Dept Epidemiol, Boston, MA 02115 USA [22]Inst Pasteur, Ctr Bioinformat Biostat & Biol Integrat, Paris, France [23]Beijing Institute of Ophthalmology, Beijing Ophthalmology and Visual Science Key Laboratory, Beijing Tongren Eye Center, Capital Medical University, Beijing, China [24]Beijing Tongren Eye Center, Beijing Tongren Hospital, Capital Medical University, Beijing, China [25]Beijing Institute of Ophthalmology, Beijing Tongren Eye Center, Beijing Ophthalmology and Visual Science Key Laboratory, Beijing Tongren Hospital, Capital Medical University, Beijing, China
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关键词: alcohol consumption cholesterol gene-environment interactions gene-lifestyle interactions genome-wide association studies lipids triglycerides

摘要:
A person's lipid profile is influenced by genetic variants and alcohol consumption, but the contribution of interactions between these exposures has not been studied. We therefore incorporated gene-alcohol interactions into a multiancestry genome-wide association study of levels of high-density lipoprotein cholesterol, low-density lipoprotein cholesterol, and triglycerides. We included 45 studies in stage 1 (genome-wide discovery) and 66 studies in stage 2 (focused follow-up), for a total of 394,584 individuals from 5 ancestry groups. Analyses covered the period July 2014-November 2017. Genetic main effects and interaction effects were jointly assessed by means of a 2-degrees-of-freedom (df) test, and a 1-df test was used to assess the interaction effects alone. Variants at 495 loci were at least suggestively associated (P < 1 x 10(-6)) with lipid levels in stage 1 and were evaluated in stage 2, followed by combined analyses of stage 1 and stage 2. In the combined analysis of stages 1 and 2, a total of 147 independent loci were associated with lipid levels at P < 5 x 10(-8) using 2-df tests, of which 18 were novel. No genome-wide-significant associations were found testing the interaction effect alone. The novel loci included several genes (proprotein convertase subtilisin/kexin type 5 (PCSK5), vascular endothelial growth factor B (VEGFB), and apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1 (APOBEC1) complementation factor (A1CF)) that have a putative role in lipid metabolism on the basis of existing evidence from cellular and experimental models.

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出版当年[2018]版:
大类 | 2 区 医学
小类 | 2 区 公共卫生、环境卫生与职业卫生
最新[2025]版:
大类 | 2 区 医学
小类 | 2 区 公共卫生、环境卫生与职业卫生
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出版当年[2017]版:
Q1 PUBLIC, ENVIRONMENTAL & OCCUPATIONAL HEALTH
最新[2024]版:
Q1 PUBLIC, ENVIRONMENTAL & OCCUPATIONAL HEALTH

影响因子: 最新[2024版] 最新五年平均 出版当年[2017版] 出版当年五年平均 出版前一年[2016版] 出版后一年[2018版]

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第一作者机构: [1]Univ Texas Hlth Sci Ctr Houston, Sch Publ Hlth, Dept Epidemiol Human Genet & Environm Sci, Ctr Human Genet, 1200 Pressler St,Suite E-429, Houston, TX 77030 USA [*1]Human Genetics Center, Department of Epidemiology, Human Genetics, and Environmental Sciences, School of Public Health, University of Texas Health Science Center at Houston, 1200 Pressler Street, Suite E-429, Houston, TX 77030
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通讯机构: [1]Univ Texas Hlth Sci Ctr Houston, Sch Publ Hlth, Dept Epidemiol Human Genet & Environm Sci, Ctr Human Genet, 1200 Pressler St,Suite E-429, Houston, TX 77030 USA [21]Harvard Univ, TH Chan Sch Publ Hlth, Dept Epidemiol, Boston, MA 02115 USA [22]Inst Pasteur, Ctr Bioinformat Biostat & Biol Integrat, Paris, France [*1]Human Genetics Center, Department of Epidemiology, Human Genetics, and Environmental Sciences, School of Public Health, University of Texas Health Science Center at Houston, 1200 Pressler Street, Suite E-429, Houston, TX 77030 [*2]Division of Biostatistics, Washington University School of Medicine, 660 South Euclid Avenue, Campus Box 8067, St. Louis,MO 63110 [*3]Human Genetics Center, Department of Epidemiology, Human Genetics, and Environmental Sciences, School of Public Health, University of Texas Health Science Center at Houston, 1200 Pressler Street, Suite E-447, Houston, TX 77030
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