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Identification and validation of a prognostic 9-genes expression signature for gastric cancer

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机构: [1]Fudan Univ, Zhongshan Hosp, Endoscopy Ctr, Shanghai, Peoples R China [2]Fudan Univ, Zhongshan Hosp, Endoscopy Res Inst, Shanghai, Peoples R China [3]Shanghai Jiao Tong Univ, Tongren Hosp, Dept Gen Surg, Sch Med, Shanghai, Peoples R China [4]Hangzhou Normal Univ, Med Sch, Lab Ctr, Hangzhou, Zhejiang, Peoples R China [5]Shanghai Jiao Tong Univ, Sch Med, Xinhua Hosp, Dept Gen Surg, Shanghai, Peoples R China [6]Shanghai Jiao Tong Univ, Sch Med, Inst Biliary Tract Dis, Shanghai, Peoples R China
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关键词: gastric cancer prognostic model survival analysis clustering analysis

摘要:
Gastric cancer (GC) is a common malignant tumor with high incidence and mortality. Reasonable assessment of prognosis is essential to improve the outcomes of patients. In this study, we constructed and validated a prognostic gene model to evaluate the risks of GC patients. To identify the differentially expressed genes between GC patients and controls, we extracted Gene expression profiles of GC patients (N=432) from Gene Expression Omnibus database and then stable signature genes by using Robust likelihood-based modeling with 1000 iterations. Unsupervised hierarchical clustering of all samples was performed basing on the characteristics of gene expressions. Meanwhile, the differences between the clusters were analyzed by Kaplan Meier survival analysis. A 9-genes model was obtained (frequency = 999; p=1.333628e(-18)), including two negative impact factors (NR1I2 and LGALSL) and 7 positive ones (C1ORF198, CST2, LAMP5, FOXS1, CES1P1, MMP7 and COL8A1). This model was verified in single factor survival analysis (p=0.004447558) and significant analysis with recurrence time (p=0.001474831) by using independent datasets from TCGA. The constructed 9-genes model was stable and effective, which might serve as prognostic signature to predict the survival of GC patients and monitor the long-term treatment of GC.

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出版当年[2016]版:
大类 | 1 区 医学
小类 | 2 区 细胞生物学 2 区 肿瘤学
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出版当年[2015]版:
Q1 CELL BIOLOGY Q1 ONCOLOGY
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影响因子: 最新[2023版] 最新五年平均 出版当年[2015版] 出版当年五年平均 出版前一年[2014版] 出版后一年[2016版]

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第一作者机构: [1]Fudan Univ, Zhongshan Hosp, Endoscopy Ctr, Shanghai, Peoples R China [2]Fudan Univ, Zhongshan Hosp, Endoscopy Res Inst, Shanghai, Peoples R China [3]Shanghai Jiao Tong Univ, Tongren Hosp, Dept Gen Surg, Sch Med, Shanghai, Peoples R China
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通讯机构: [1]Fudan Univ, Zhongshan Hosp, Endoscopy Ctr, Shanghai, Peoples R China [2]Fudan Univ, Zhongshan Hosp, Endoscopy Res Inst, Shanghai, Peoples R China [5]Shanghai Jiao Tong Univ, Sch Med, Xinhua Hosp, Dept Gen Surg, Shanghai, Peoples R China [6]Shanghai Jiao Tong Univ, Sch Med, Inst Biliary Tract Dis, Shanghai, Peoples R China
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