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Investigating possible dilated cardiomyopathy targets via bioinformatic analysis

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收录情况: ◇ SCIE ◇ 预警期刊

机构: [1]Shanghai Jiao Tong Univ, Tongren Hosp, Sch Med, Div Cardiol, Shanghai, Peoples R China [2]Liqun Hosp, Dept Cardiovasc Med, Shanghai, Peoples R China
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关键词: Dilated cardiomyopathy KEGG gene set enrichment analysis BMP6 CD69 RUNX2 SPP1

摘要:
Dilated cardiomyopathy (DCM) is the most common cardiomyopathy associated with heart failure; however, the underlying mechanism remains unclear. Initially, gene expression data of patients with DCM from the GSE4172 and GSE21610 datasets were obtained from the Gene Expression Omnibus website. Differentially expressed genes (DEGs) were analyzed with a false discovery rate < 0.05 and log2 fold change > 1.2. Furthermore, both the Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis and Gene Set Enrichment Analysis (GSEA) were used to investigate the functional annotations. STRING and Cytoscape tools were used to form the protein-protein interaction (PPI) network and authenticate hub genes. Thereafter, the signature of immune-related genes (IRGs) was selected from the DEGs and data via the IMMPORT website. Hub genes were selected from the differentially expressed IRGs that formed the PPI network. Finally, the receiver-operating characteristic curves of the key genes were measured as biomarkers of DCM. A total of 173 independent DEGs (103 upregulated and 70 downregulated genes) were found in the microarray datasets GSE4172 and GSE21610. KEGG analysis and GSEA indicated that the BMP signaling pathway and apoptosis-related signals have a key effect on DCM development. The 10 hub genes also indicated the key effect of the BMP signaling pathway on DCM. A total of 224 differentially expressed IRGs and 20 featured IRGs were identified. Finally, BMP6, CD69, RUNX2, and SPP1 were identified as possible targets for DCM. Our data suggest a possible molecular regulatory mechanism for DCM therapy. Moreover, BMP6, CD69, RUNX2, and SPP1 may have key effects on the development of DCM.

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出版当年[2022]版:
大类 | 4 区 医学
小类 | 4 区 肿瘤学 4 区 医学:研究与实验
最新[2023]版:
大类 | 4 区 医学
小类 | 4 区 医学:研究与实验 4 区 肿瘤学
JCR分区:
出版当年[2021]版:
Q3 MEDICINE, RESEARCH & EXPERIMENTAL Q3 ONCOLOGY
最新[2023]版:
Q3 MEDICINE, RESEARCH & EXPERIMENTAL Q4 ONCOLOGY

影响因子: 最新[2023版] 最新五年平均 出版当年[2021版] 出版当年五年平均 出版前一年[2020版] 出版后一年[2022版]

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第一作者机构: [1]Shanghai Jiao Tong Univ, Tongren Hosp, Sch Med, Div Cardiol, Shanghai, Peoples R China
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通讯机构: [1]Shanghai Jiao Tong Univ, Tongren Hosp, Sch Med, Div Cardiol, Shanghai, Peoples R China [2]Liqun Hosp, Dept Cardiovasc Med, Shanghai, Peoples R China [*1]De-partment of Cardiovascular Medicine, Liqun Hos-pital, Putuo District, Shanghai, China [*2]Division of Cardiology, Tongren Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai, China
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