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A chromatin accessibility landscape during early adipogenesis of human adipose-derived stem cells

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机构: [1]Department of Biochemistry & Immunology, Capital Institute of Pediatrics, Beijing, China [2]Beijing Municipal Key Laboratory of Child Development and Nutriomics, Capital Institute of Pediatrics, Beijing, China [3]Division of achievements transformation, Development Center for Medical Science & Technology National Health Commission of the People’s Republic of China, Beijing, China [4]Shanghai Jiayin Biotechnology Co., Ltd, Shanghai, China [5]Beijing TongRen Hospital, Capital Medical University, Beijing, China
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关键词: Obesity human adipose-derived stem cells adipogenesis ATAC-seq chromatin accessibility

摘要:
Obesity has become a serious global public health problem; a deeper understanding of systemic change of chromatin accessibility during human adipogenesis contributes to conquering obesity and its related diseases. Here, we applied the ATAC-seq method to depict a high-quality genome-wide time-resolved accessible chromatin atlas during adipogenesis of human adipose-derived stem cells (hASCs). Our data indicated that the chromatin accessibility drastic dynamically reformed during the adipogenesis of hASCs and 8 h may be the critical transition node of adipogenesis chromatin states from commitment phase to determination phase. Moreover, upon adipogenesis, we also found that the chromatin accessibility of regions related to anti-apoptotic, angiogenic and immunoregulatory gradually increased, which is beneficial to maintaining the health of adipose tissue (AT). Finally, the chromatin accessibility changed significantly in intronic regions of peroxisome proliferator-activated receptor gamma during adipogenesis, and these regions were rich in transcription factors binding motifs that were exposed for further regulation. Overall, we systematically analysed the complex change of chromatin accessibility occurring in the early stage of adipogenesis and deepened our understanding of human adipogenesis. Furthermore, we also provided a good reference data resource of genome-wide chromatin accessibility for future studies on human adipogenesis.

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出版当年[2021]版:
大类 | 4 区 生物学
小类 | 4 区 内分泌学与代谢
最新[2023]版:
大类 | 4 区 生物学
小类 | 4 区 内分泌学与代谢
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出版当年[2020]版:
Q2 ENDOCRINOLOGY & METABOLISM
最新[2023]版:
Q2 ENDOCRINOLOGY & METABOLISM

影响因子: 最新[2023版] 最新五年平均 出版当年[2020版] 出版当年五年平均 出版前一年[2019版] 出版后一年[2021版]

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第一作者机构: [1]Department of Biochemistry & Immunology, Capital Institute of Pediatrics, Beijing, China [2]Beijing Municipal Key Laboratory of Child Development and Nutriomics, Capital Institute of Pediatrics, Beijing, China
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通讯机构: [2]Beijing Municipal Key Laboratory of Child Development and Nutriomics, Capital Institute of Pediatrics, Beijing, China [5]Beijing TongRen Hospital, Capital Medical University, Beijing, China [*1]Beijing TongRen Hospital, Capital Medical University, 100730 Beijing, China
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